What the statewide pattern says
Lagoons on the plains, shallow wells in the basin
New Mexico's higher nitrate comes from two documented settings: the state-monitored dairy belt on the eastern plains, and shallow basin-fill wells in the Espanola Basin around Santa Fe.
New Mexico is one of the few states that requires dairies to monitor their own groundwater, which produced a rare statistical picture: across 94 permitted dairies and 1,031 samples, median nitrate was 4.4 mg/L and 36 percent of dairies reported results above the 10 mg/L federal limit. The worst cases sat downgradient of waste lagoons and stock pens (medians to 18 mg/L), and high readings were rare where the water table lay deeper than 100 feet (USGS/EPA animal-feeding-operations proceedings). The dairy belt clusters over river alluvium and the Ogallala on the state's east side — Curry, Lea and Roosevelt country, which is where this page's map concentrates.
Around Santa Fe, the Bureau of Geology's basin-wide geochemical study found nitrate from under 0.1 to 15 mg/L with a 1.5 mg/L median — and a sharp structural pattern: every reading above 6 mg/L came from wells shallower than 500 feet. A significant nitrate-chloride correlation (r = 0.62) points to septic influence, with documented MCL exceedances near the landfill and in one fractured-bedrock well (New Mexico Bureau of Geology and Mineral Resources, southern Espanola Basin geochemical study).
Between those two settings the state runs low: deep Ogallala and confined basin-fill water is largely protected by depth, which is exactly the variable the dairy statistics identify as protective.
The supported source reading is dairy waste — lagoons, pens and land-application — on the eastern plains; septic and localized sources in shallow Santa Fe basin wells — not a certified source at any individual system (Nolan and Hitt, 2006).